PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074319001
Common NameGSBRNA2T00074319001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 325aa    MW: 36050.3 Da    PI: 6.0683
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.2e-1070110545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  GSBRNA2T00074319001  70 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 110
                          7889************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-860113No hitNo description
SMARTSM003381.8E-666129IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.43868112IPR004827Basic-leucine zipper domain
PfamPF001706.7E-770110IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-770113No hitNo description
CDDcd147083.53E-2270122No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
PfamPF141442.1E-34152227IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADTSSRTDA STDGDTDPRD LGSFYNLYSV IRGRLEPGFP WDILPSERGQ VMLAGASDSS  60
DRSKDKLDQK TLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLTQLEQEL QRARQQGVFI  120
SSSGDQAHST GGNGALAFDA EYSRWLEEKN RQMNELRSAL NAHAGDTELR TIVDGVMAHY  180
EELFRIKSNA AKNDVFHILS GMWKTPAERC FLWLGGFRSS ELLKLLANQL EPMTERQVLG  240
INSLQQTSQQ AEDALSQGME SLQQSLAETL SSGTLGSCSS DNVASYMGQM AMAMGQLGTL  300
EGFIRQVHLE CYGTTQSGCV VYRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.86501e-169seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains.
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots and flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074319001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936100.0AB493610.1 Arabidopsis thaliana At3g12250 mRNA for hypothetical protein, partial cds, clone: RAAt3g12250.
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731750.10.0transcription factor TGA6-like isoform X6
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A078HZG70.0A0A078HZG7_BRANA; BnaC05g40810D protein
STRINGXP_010464987.10.0(Camelina sativa)
STRINGXP_010486922.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.41e-162TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]