PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074042001
Common NameGSBRNA2T00074042001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 415aa    MW: 45183.3 Da    PI: 10.1448
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074042001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.4e-23296356161
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l++++ +l+ 
  GSBRNA2T00074042001 296 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSNNLRG 356
                          89*****************************************************999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-3041136IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-14166255No hitNo description
Gene3DG3DSA:1.20.5.1708.1E-19290356No hitNo description
PfamPF001706.5E-21296358IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21296360IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346298361IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11299355No hitNo description
CDDcd147021.55E-21301352No hitNo description
PROSITE patternPS000360303318IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSQLIKHHRS LRFFSIWISE RAYRFLEKET IVVKCGNVKT MGKSEEPKVT KSDNKPSSPP  60
ADQTNVHVYP DWAAIQAYYG PRVAMPPYYN SAMAAASGHP PPPYMWNPQH MMSPYGTPYA  120
AVYPHGGGVY AHPGFPMPQS QKGAALSTPG TPLNIDTPSK STGNTENGLM KKLKEFDGLA  180
MSLGNGNNGD EGKRSRNSSE TDGSSDGSDG NTTGADEPKL KRSREGTPTK DEKKHLVQSS  240
SFRSVSQSSG DNVVKHSVQG GGGAIVSAAG VSANSNPTFM SQSLAMVPPE TWLQNERELK  300
RERRKQSNRE SARRSRLRKQ AETEELARKV EALTAENMAL RSELNQLNEK SNNLRGANAT  360
LLDKLKSSEP EKRVKSSGNG DDKNKKQGDN ETNSTSKLHQ LLDTKPRADG VAAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312318RRSRLRK
2312319RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21350.0leaf| microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074042001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU271080.0U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556027.10.0G-box-binding factor 3-like isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A078HXG90.0A0A078HXG9_BRANA; BnaC04g01070D protein
STRINGBo4g010410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.10.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]