PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071735001
Common NameGSBRNA2T00071735001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 178aa    MW: 20582.1 Da    PI: 10.3406
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071735001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.56e-1369127563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +r+rr+ +NRe+ArrsR R k++i+eL++ v++L   N+ L +++ +l +   +  +e+
  GSBRNA2T00071735001  69 RRARRMVSNRESARRSRMRTKKQIQELQQQVEQLMILNHNLSEKVIHLLESNHQILQEN 127
                          79*******************************************99999999888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-1165129IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.40467130IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-1069121No hitNo description
PfamPF001706.9E-1069127IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-1069125No hitNo description
CDDcd147024.71E-770133No hitNo description
PROSITE patternPS0003607287IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MESSVHRSHH CFDILEGMSP QGDHFNSAFL PNANFHVSLQ SLPPNSSTHN NNNRSHLNPT  60
IYHNEGLERR ARRMVSNRES ARRSRMRTKK QIQELQQQVE QLMILNHNLS EKVIHLLESN  120
HQILQENSQL KEKVSSFQLL MAEMQIPMRN VDGSINDRVV NHLRGETLNR TNAFFGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071735001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1496350.0AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022551334.11e-126basic leucine zipper 43-like
TrEMBLA0A078HSJ31e-125A0A078HSJ3_BRANA; BnaC02g41810D protein
STRINGBo2g161130.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.11e-61basic leucine-zipper 70
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]