PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071717001
Common NameGSBRNA2T00071717001, LOC106380102
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 231aa    MW: 24924.2 Da    PI: 11.1222
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071717001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.65.4e-39351893117
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 
                          +kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+q++p+i+ +tgt++++as++++++   s+s ++++    
  GSBRNA2T00071717001  35 VKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQSEPSIITATGTGTTPASFSTTSTCTISSSLDHKPllgs 124
                          79*************************************************************999998884333333333333335567 PP

                  TCP  89 .....................................kaaksaa.kskksqksaasalnlakesrak 117
                                                               + a+ ++  ++++q++aa   ++ +++r++
  GSBRNA2T00071717001 125 spfilgkrvregsrgaipagswsvparpefgqvlsfaAGAPHEMfLQQHQQQQAA--AHFVHQQRQQ 189
                          7888888888889999999999999999999999987444444435555555555..5555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.4584094IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-3240184IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFNTTNGVMI SNGDILERQR QKQQQQQPSE GALVVKKPPA KDRHTKVDGR GRRIRMPIIC  60
AARVFQLTRE LGHKSDGQTI EWLLRQSEPS IITATGTGTT PASFSTTSTC TISSSLDHKP  120
LLGSSPFILG KRVREGSRGA IPAGSWSVPA RPEFGQVLSF AAGAPHEMFL QQHQQQQAAA  180
HFVHQQRQQQ GAIGEASAAR VGNYLPGHLN LLASLSAGAP GSGRREYCPR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.139571e-64seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071717001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618051.11e-169PREDICTED: transcription factor TCP7-like
RefseqXP_013675372.11e-169transcription factor TCP7
SwissprotQ9FMX26e-96TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A078HTY11e-168A0A078HTY1_BRANA; BnaC02g41680D protein
TrEMBLA0A0D3AY141e-168A0A0D3AY14_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D7S51e-168A0A3P6D7S5_BRAOL; Uncharacterized protein
STRINGBo2g160970.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-72TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]