PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071649001
Common NameGSBRNA2T00071649001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 178aa    MW: 18874.3 Da    PI: 11.0794
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071649001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.58.1e-41211372112
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 
                          a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s ss+ +   +   
  GSBRNA2T00071649001  21 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLSASSSPF---Algk 107
                          79*******************************************************************88844333333332...1334 PP

                  TCP  89 ......kaaksaakskksqksaasalnlak 112
                                ++++++   +++q+++++  ++a+
  GSBRNA2T00071649001 108 rmlftqQQQAATLFVRQQQQQQHASAAVAA 137
                          677774222222233333333332333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3427131IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2872781IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENNDGAMTN GVIINKGPLN AVKKPPTKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH  60
KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTASLSASS SPFALGKRML FTQQQQAATL  120
FVRQQQQQQH ASAAVAAMGE ASAARVGNYL PGHHLNLLAS LSGGSPGSGR REEDDSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.216311e-38leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071649001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675752.11e-88transcription factor TCP21 isoform X4
SwissprotQ9FTA22e-64TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A078HSE21e-127A0A078HSE2_BRANA; BnaAnng06150D protein
STRINGBo2g009040.11e-84(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-44TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  4. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]