PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069686001
Common NameGSBRNA2T00069686001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 301aa    MW: 32216.9 Da    PI: 5.8366
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069686001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.16.2e-21193255163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++e+kr rrkq+NRe+Ar sR+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+se+
  GSBRNA2T00069686001 193 DREVKRRRRKQSNRESARISRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTSEN 255
                          5899*********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165967.6E-866101No hitNo description
PfamPF165961.4E-8132171No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-17186252No hitNo description
SMARTSM003386.0E-19193257IPR004827Basic-leucine zipper domain
PfamPF001704.4E-19194255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.645195258IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11196252No hitNo description
CDDcd147025.93E-23198248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPPYGTPTHP YVTMYPPGGM YGHPSIPPGS YPYSPYAMPS PNGMTEASGN TTGGTEVEAK  60
QSEMKEKLPI KRSRGGSLGS LNMITGKNSG ASANGAYSKS AMIIMICDSD LLFNPLYNSG  120
SGGSANGPRD GSVGSQTVPV MPMTAAGVPA PPTNLNIGMD YWGAPTSAST PVHGVVAPVS  180
RDGGRSQPWL QDDREVKRRR RKQSNRESAR ISRLRKQAEC DELAQRAEVL NEENASLREE  240
INKLRSQCEE LTSENTSLKD QLLSFPTLEG VAMDKDEQEP PDTNQTGVAE TKADSYKDSK  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069686001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004270.11e-161bZIP transcription factor 16 isoform X2
SwissprotQ501B21e-159BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A078HPI70.0A0A078HPI7_BRANA; BnaA04g20520D protein
STRINGBostr.23794s0549.1.p1e-161(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-143basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]