PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068770001
Common NameGSBRNA2T00068770001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 395aa    MW: 41431.4 Da    PI: 6.4564
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.21.4e-42502213136
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                          + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++   
  GSBRNA2T00068770001  50 VTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsk 139
                          689*****************************************************************9998888888888866666777 PP

                  TCP  89 .................................kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                                                           ++ ++++ +++++q++a++   ++ es +++r r+ ++++e+   k+++
  GSBRNA2T00068770001 140 svplygalglthhqyeeqggafgahtppllgfhHHLQQHQqQQHHQQAPAETIPGPDGESFSRKRYRSVDSSKEDGEGKQNE 221
                          888999999999999999***********99985556665456666666666677777888888888777777776666554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4254214IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41155109IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDLSDDGAAA RGGSRHLVDP SLSIVPRSTP PEDPTTSSPA AAAATTSEVV TKRSTKDRHT  60
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS  120
SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQHQQ  180
QQHHQQAPAE TIPGPDGESF SRKRYRSVDS SKEDGEGKQN ENKSLKESEP PAAATGAPMW  240
AVAPTNRSAG GNTFWMLPVP TTAAGNQPAA MESSSNASRA HMWPFGGGGA GAGGGGATHF  300
MAGTGFSFPM DQYRGSPLQL GSFLAQPQQP NQNIGLSMPD SNLGVLAALN AAYPRGGNAN  360
AEQVNNAVEH QEKQQPQQSD QDDDSRDENS NSDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.150911e-178seed
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068770001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570249.10.0transcription factor TCP8-like
SwissprotQ9C5181e-178TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A078HRL40.0A0A078HRL4_BRANA; BnaA09g14960D protein
STRINGBra027886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-147TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]