PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065437001
Common NameGSBRNA2T00065437001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 303aa    MW: 34305.6 Da    PI: 7.3618
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065437001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-193292357
                         --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+t+t+eq+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  GSBRNA2T00065437001 32 TRWTPTTEQIRILKDLYYNngVRSPTADQIQKISARLrqygKIEGKNVFYWFQNHKARERQ 92
                         8*****************8678*************************************97 PP

2Wus_type_Homeobox114.36e-373094265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++tRWtPt+eQi+iL++ly+ +G+r+P++++iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
  GSBRNA2T00065437001 30 TSTRWTPTTEQIRILKDLYYnNGVRSPTADQIQKISARLRQYGKIEGKNVFYWFQNHKARERQKK 94
                         789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-8892IPR009057Homeodomain-like
SuperFamilySSF466899.84E-121794IPR009057Homeodomain-like
PROSITE profilePS5007110.4462793IPR001356Homeobox domain
SMARTSM003897.8E-62997IPR001356Homeobox domain
CDDcd000861.44E-73294No hitNo description
PfamPF000466.3E-173292IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEPPQHHHQA DQENGNNNKS GSGSYTCRQT STRWTPTTEQ IRILKDLYYN NGVRSPTADQ  60
IQKISARLRQ YGKIEGKNVF YWFQNHKARE RQKKRFNGTV MTTPTSSSPN SVMMASDHYY  120
NHHPLLHHPQ QGVTMHRPAS VNVKLDQENH LLQENRSYPS FNNGTGTECG ALNASSNGYM  180
NSHLYGSVEQ DCSMSYNNVG GEWTNMDHNH HYSAPAYNFF DRPKPMYELE VHEEEGDYGG  240
DAYLEHRRTL PLFPMHGEDH INGGGGVIWK HGQSDGRDRY GRGPCASLKL CLNSYAAGVT  300
QD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065437001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752528.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ9SB921e-137WUS_ARATH; Protein WUSCHEL
TrEMBLA0A078HLE00.0A0A078HLE0_BRANA; BnaA07g02390D protein
STRINGBra039894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-138WOX family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]