PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064149001
Common NameGSBRNA2T00064149001, LOC106434307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 358aa    MW: 40404.4 Da    PI: 8.2925
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064149001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.28.6e-212388171
              E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                         rkeksL++l ++f++++++ + +   ++e+a +L    v  +rRRiYD++N+Le+++++++k kn ++w+g
  GSBRNA2T00064149001 23 RKEKSLGVLVSNFVRIYNRDDVDLFGIDEAAAKL---GV--ERRRIYDVVNILESIEVVSRKGKNLYSWNG 88
                         79*****************999************...**..****************************98 PP

2E2F_TDP82.92.6e-26148228171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          +ke+sL+ll+q+f+k++ +s+++ +tl+++ak+L+s+     ++++k+RR+YDi+NVL++++liek     ++k++++w g
  GSBRNA2T00064149001 148 KKESSLWLLSQNFVKMFLCSHDDLITLDSAAKALLSDsqdpmHMRTKVRRLYDIANVLSSMELIEKthipgTRKPAYKWLG 228
                          689****************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-222089IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.5E-152286IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-242388IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-172488IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.4E-22146230IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-30148228IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.7E-20149228IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.07E-13151229IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEKMPWIVSS QDVDALALQS YSRKEKSLGV LVSNFVRIYN RDDVDLFGID EAAAKLGVER  60
RRIYDVVNIL ESIEVVSRKG KNLYSWNGFL HIPRSLHHLK EEGLREGFGT SSICINSQKV  120
SLDDESEESF SLTPDDQDNS SLSKLDHKKE SSLWLLSQNF VKMFLCSHDD LITLDSAAKA  180
LLSDSQDPMH MRTKVRRLYD IANVLSSMEL IEKTHIPGTR KPAYKWLGSK SLTEKGSSLF  240
NSTTESKKRV FGTEITNFST KRNKTDCSSN YVQNGYNKHV EEEKKPAAKS YVFGPFSPTG  300
ASKKNNNNAG TNNSGRLQDL EALSSTYKPQ YCNQDVTGLL GHYTEAWNKW FAELDRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-33222203228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064149001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730600.10.0PREDICTED: E2F transcription factor-like E2FF
SwissprotQ8RWL00.0E2FF_ARATH; E2F transcription factor-like E2FF
TrEMBLA0A078HIN70.0A0A078HIN7_BRANA; BnaA05g33960D protein
STRINGBra039127.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60032547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-171DP-E2F-like protein 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]