PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00062162001
Common NameGSBRNA2T00062162001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 242aa    MW: 25922.4 Da    PI: 7.6473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00062162001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-0595117123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ CgksF++   L  H  +H
  GSBRNA2T00062162001  95 FKCTVCGKSFNSYQALGGHKTSH 117
                          89**********99998888777 PP

2zf-C2H212.80.00036164186123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C ksFs+   L  H r+H
  GSBRNA2T00062162001 164 HTCSICFKSFSSGQALGGHKRSH 186
                          79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-994117No hitNo description
PfamPF139121.2E-1395119IPR007087Zinc finger, C2H2
SMARTSM003550.005295117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.92895122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-495117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-9159186No hitNo description
PROSITE profilePS501579.66164186IPR007087Zinc finger, C2H2
PfamPF139123.1E-11164188IPR007087Zinc finger, C2H2
SMARTSM003550.19164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALETLNSPT SATATALPLL RYREEMEPDN LEQWAKRKRT KRQRLDQNHH NQETTPSEEE  60
YLALCLLMLA RGTAVQPPLT PPPPSHRSRS DHRDFKCTVC GKSFNSYQAL GGHKTSHRKP  120
PANNVNVPSS QEPSNNNSHG NGGSVVFSGN GTASNGVNLS GKIHTCSICF KSFSSGQALG  180
GHKRSHYDGG NNGNGNGSVE VMGGSDVSDV DDERSSEQTA FGGHRGFDLN LPADQVSVVI  240
A*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00062162001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626356.10.0PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW11e-107AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078HI691e-179A0A078HI69_BRANA; BnaC03g48520D protein
TrEMBLA0A0D3BEJ81e-179A0A0D3BEJ8_BRAOL; Uncharacterized protein
STRINGBo3g096410.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-88zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]