PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061105001
Common NameGSBRNA2T00061105001, LOC106406014
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 243aa    MW: 26758.6 Da    PI: 5.7944
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061105001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06542637
             zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                         C+ ++++e++ fC  ++  lC+ C  + H         H
  GSBRNA2T00061105001  5 CDVCDKEEASVFCCADEAALCNGCDRHVH-FanklagkH 42
                         **************************999.323455555 PP

2zf-B_box29.12e-095592338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  GSBRNA2T00061105001 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
                         789*****************************767876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
SMARTSM003363.4E-9447IPR000315B-box-type zinc finger
CDDcd000215.08E-7547No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006437.4E-85593IPR000315B-box-type zinc finger
CDDcd000211.49E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHQRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGVKISASPS TYPKASNSNS  120
TAALSRAKTR PKSVSGEVPS SASSEVFASS PSTTTSNYYY GLDENYHQVS DSGSGSGGTG  180
SISEYLMETL PGWRVEDLLE HPSCVSYEDN TMNTNNNESY MVYDGSSSQY LHQGFWEQKP  240
FS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061105001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629361.10.0PREDICTED: B-box zinc finger protein 20
RefseqXP_013702049.10.0PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-145BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A078FGM40.0A0A078FGM4_BRANA; BnaC03g60330D protein
TrEMBLA0A0D3BJC30.0A0A0D3BJC3_BRAOL; Uncharacterized protein
STRINGBra010713.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-129DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]