PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061090001
Common NameGSBRNA2T00061090001, LOC106404604
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 181aa    MW: 19769.2 Da    PI: 5.9294
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061090001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                          C+ +e+  ++ fC  ++  lC+ C ++ H
  GSBRNA2T00061090001  4 LCDACENAAAIVFCAADEAALCRPCDEKVH 33
                         6*******9******************998 PP

2zf-B_box26.71.1e-085291237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  GSBRNA2T00061090001 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                         789***************************9996555556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.224147IPR000315B-box-type zinc finger
CDDcd000211.68E-6345No hitNo description
SMARTSM003361.5E-7447IPR000315B-box-type zinc finger
PfamPF006433.0E-5442IPR000315B-box-type zinc finger
SMARTSM003362.2E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9165196IPR000315B-box-type zinc finger
PfamPF006431.7E-65291IPR000315B-box-type zinc finger
CDDcd000211.51E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDRPKQ NNARDNMQNQ  120
RVSASANGEA NGKTDDEMID LNANPQRVHE PSSNNQGIDV NNTNNHEPAG VGPFKRESEK  180
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.220750.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061090001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937280.0AB493728.1 Arabidopsis thaliana At4g38960 mRNA for hypothetical protein, partial cds, clone: RAAt4g38960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626311.11e-131PREDICTED: B-box zinc finger protein 19 isoform X1
RefseqXP_013700763.11e-131PREDICTED: B-box zinc finger protein 19 isoform X1
SwissprotC0SVM51e-124BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A078FFV41e-131A0A078FFV4_BRANA; BnaC03g60270D protein
TrEMBLA0A0D3BJB21e-131A0A0D3BJB2_BRAOL; Uncharacterized protein
STRINGBra010718.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-126DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]