PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058500001
Common NameGSBRNA2T00058500001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 314aa    MW: 33729.1 Da    PI: 6.2644
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058500001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.81.4e-24221283163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+
  GSBRNA2T00058500001 221 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSGECEKLKTEN 283
                          89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.4E-30194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1709.1E-21218281No hitNo description
SMARTSM003384.3E-23221285IPR004827Basic-leucine zipper domain
PfamPF001702.1E-22221283IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.61223286IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.46E-12224280No hitNo description
CDDcd147023.10E-23226276No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGTSEENTPF KPSKPASSAQ DTPPTPYADW SNSMQAYYGG GGTPSPFFPS PVGSPSPHPY  60
MWGAQHHMMP PYGTPVPYPA MYPPGTVYAH PGMPMPQASG PTNTEIVKAQ APGKKPKGNS  120
KRKSGGGEKV LSGSGNDAVS QSEESVAAGS SDENDDNANH QEQGSLRKPS FGQMLADASS  180
QSNTTGEIQG SMPMKPVAPG TNLNMGMELW SSQTGVAVKD ERELKRQKRK QSNRESARRS  240
RLRKQAECEQ LQQRVESLTS ENQSLRDELQ RLSGECEKLK TENNTIQDEL VRVHGPEAVA  300
NLEQNADGSK DGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243RRSRLRK
2237244RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.23800.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058500001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839210.0X83921.1 B.napus mRNA for G-Box binding factor 1B (partial).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630448.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_013630449.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_013630450.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_013685616.10.0G-box-binding factor 1-like
RefseqXP_013685618.10.0G-box-binding factor 1-like
RefseqXP_013685619.10.0G-box-binding factor 1-like
RefseqXP_022555745.10.0G-box-binding factor 1-like
SwissprotP427740.0GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A078HCJ70.0A0A078HCJ7_BRANA; BnaC03g61840D protein
STRINGBra010572.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-167G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]