PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056449001
Common NameGSBRNA2T00056449001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 301aa    MW: 34065.7 Da    PI: 5.2473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-0919422347
                         -HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                         +W+ Ia++++ gRt++++k++w+++
  GSBRNA2T00056449001 19 RWAHIASHLP-GRTDNEIKNYWNSW 42
                         4*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.481147IPR017930Myb domain
SuperFamilySSF466893.12E-81352IPR009057Homeodomain-like
CDDcd001671.79E-71443No hitNo description
PfamPF002495.0E-71942IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-111943IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MYVLNCLMFL SLLLYMFFRW AHIASHLPGR TDNEIKNYWN SWIKKKIRKP HHHYNRHQPS  60
KTTVTLNVEA TSTVTALPST TTTSTIDNLH FDGFMDSPNQ LNFPYDQETN AKIQEALFSH  120
KPHLFMLDTT LPVLEGMFSQ NIITNNNNNN NDYDTQTGGR GSVFEQSFLT HNTEQGDMNL  180
PQQERFQLPT MVSNLFSNST NSNTETVTSY KLPALVGGNL NNISQVDNNN AQDGDIASTF  240
ECLRKQELNY DEWINSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMTLGSS ALSSSFPSSF  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056449001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892640.0AC189264.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022A09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112912.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A078H9E80.0A0A078H9E8_BRANA; BnaA09g11280D protein
STRINGBra027668.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87602539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-118myb domain protein 103
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]