PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056180001
Common NameGSBRNA2T00056180001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 178aa    MW: 19642.7 Da    PI: 5.021
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056180001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP35.53.5e-115315344112
                  TCP  44 dsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............................................. 88 
                          d++ti+WLlq a+p+i++ tg+++++as+    +s+ ++++++ g                                             
  GSBRNA2T00056180001  53 DGETIQWLLQHAEPSIIASTGSGTIPASAL---ASVANHHHHQGGslttglmishelrvvvglvvvdqigeleaekegeeekllgqiyqi 139
                          89*************************777...333333333333466778888888888888888888888888888776666555433 PP

                  TCP  89 kaaksaakskksqksaasalnlak 112
                                     +q s+a+ + l++
  GSBRNA2T00056180001 140 Y----------QQMSQAQGRVLHH 153
                          1..........2222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-753163IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTTFFFIVSY SISRSGPVRP HTNRQQEPNF LNPPPQPQRH QETAEIKDFE IVDGETIQWL  60
LQHAEPSIIA STGSGTIPAS ALASVANHHH HQGGSLTTGL MISHELRVVV GLVVVDQIGE  120
LEAEKEGEEE KLLGQIYQIY QQMSQAQGRV LHHSLNPSHE EHQQESDEKD DSQGSGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056180001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710164.11e-16transcription factor TCP20-like
RefseqXP_013710165.11e-16transcription factor TCP20-like
TrEMBLA0A078H6J21e-125A0A078H6J2_BRANA; BnaA02g28500D protein
STRINGBra032973.1-P1e-113(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-18TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]