PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055426001
Common NameGSBRNA2T00055426001, LOC106425049
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 142aa    MW: 15568.8 Da    PI: 10.0703
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055426001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.3e-183467134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C+ Cgt+kTplWR gp g+k+LCnaCG+++rk++
  GSBRNA2T00055426001 34 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKRR 67
                         ********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8352864IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-142880IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-123070No hitNo description
Gene3DG3DSA:3.30.50.104.8E-153267IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.82E-123369No hitNo description
PfamPF003201.5E-163467IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MLDHSEEEYS ETMKKIAEDA IEQNRTCSNE KKTCADCGTS KTPLWRGGPA GPKSLCNACG  60
IRNRKRRRGV EDKKQPKKTN SGGGGGGDLK RSPKVGESMK QRMMDLGMTK RSRVEKQLRK  120
LGEEEQAAVL LMALSYGSVY A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.285241e-128seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055426001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721227.11e-99GATA transcription factor 16
SwissprotQ9FJ105e-63GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A078HAQ12e-98A0A078HAQ1_BRANA; BnaA02g30690D protein
STRINGBra020650.1-P1e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-62GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]