PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053259001
Common NameGSBRNA2T00053259001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 211aa    MW: 23085.3 Da    PI: 7.405
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053259001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.6e-101248237
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37
                         ++R+++tkeq++ Le+l+++  r+psa+++++++++l
  GSBRNA2T00053259001 12 SPRWNPTKEQITLLENLYKQgIRTPSADQIQQITSRL 48
                         58*****************99**************99 PP

2Wus_type_Homeobox66.26e-221268357
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkied..kNVfyWFQNr 57
                         ++RW+Pt+eQi++Le+lyk+G+rtP++++iq+it++L+++G+ie    N +y  Q r
  GSBRNA2T00053259001 12 SPRWNPTKEQITLLENLYKQGIRTPSADQIQQITSRLRAHGHIEVgcVNPYYLHQVR 68
                         78****************************************986124567776654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000468.0E-81348IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MENEGSAGTG SSPRWNPTKE QITLLENLYK QGIRTPSADQ IQQITSRLRA HGHIEVGCVN  60
PYYLHQVRDH HNQHGSVYRQ DLHSNKVMLP SGGYEERTTT DHKKHVSDIT TTTARMSMSS  120
SSLRFDRFAL GNHGYFSEGI NVNTNGLKTL PLFPLQPLDA ANDSGVGNSS FSLRHDSPVT  180
YCGDDGGRGQ PFIGFFSSGS SRFDNSGNGL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106690.0microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053259001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716707.11e-138PREDICTED: WUSCHEL-related homeobox 2-like
SwissprotQ6X7K14e-93WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A078H3671e-156A0A078H367_BRANA; BnaA10g12360D protein
STRINGBra002576.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-81WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]