PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052814001
Common NameGSBRNA2T00052814001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 197aa    MW: 21269.9 Da    PI: 8.1346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052814001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-0894121330
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIart 30 
                          +WT+eE+  ++ + ++lG+g+W+ I+r 
  GSBRNA2T00052814001  94 PWTEEEHRTFLIGLEKLGKGDWRGISRN 121
                          8************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.2E-4320IPR001878Zinc finger, CCHC-type
SuperFamilySSF466899.36E-789122IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-890124IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.6E-891121IPR009057Homeodomain-like
CDDcd001672.10E-594122No hitNo description
PfamPF002492.0E-594121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRRCSHCGN VGHNSRTCSS YKTRVIRLFG VHVDTRGSSP PPLPPPPSSL LAAAMKKSFS  60
MDCLPACSTS SSSFAGYLSD GLTHRTPDRK KGVPWTEEEH RTFLIGLEKL GKGDWRGISR  120
NFVVFAGNFE ENSTIPGNDR IGSTTDVVWK QGSVNPCLGY QDPEVSEPGD SGELDLDLKL  180
ASLRTSESNI RPISVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052814001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0149561e-117BT014956.1 Arabidopsis thaliana At5g56840 gene, complete cds.
GenBankBT0125281e-117BT012528.1 Arabidopsis thaliana At5g56840 gene, complete cds.
GenBankAY5195171e-117AY519517.1 Arabidopsis thaliana MYB transcription factor (At5g56840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120194.11e-126PREDICTED: protein REVEILLE 5-like
TrEMBLA0A078H4H91e-143A0A078H4H9_BRANA; BnaA10g10930D protein
STRINGBra002790.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-86MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]