PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051803001
Common NameGSBRNA2T00051803001, LOC106369607
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 177aa    MW: 20559 Da    PI: 10.007
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051803001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.2e-4061136277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          Cqv++C+a+l+eak+y+rrhkvCevh+ka++++vsg ++rfCqqCsrfhel efDe+krsCr rLa+hnerrrk +
  GSBRNA2T00051803001  61 CQVHRCTANLTEAKQYYRRHKVCEVHAKASAATVSGAKHRFCQQCSRFHELPEFDEAKRSCRMRLAGHNERRRKVS 136
                          *************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114130.40258135IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.8E-3158122IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-3659139IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3061134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEKSQRWSYV KDKAIISNLA EQEWENSMDG EEEDAGDEDK RKRVTERARD TNTDRVPPRL  60
CQVHRCTANL TEAKQYYRRH KVCEVHAKAS AATVSGAKHR FCQQCSRFHE LPEFDEAKRS  120
CRMRLAGHNE RRRKVSGDSF GERSGRRGFR GQLIQTQERN NVDMKLPMAN TSFKRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3759134984squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051803001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0037141e-158BT003714.1 Arabidopsis thaliana At3g15270 mRNA, complete cds.
GenBankAK1186111e-158AK118611.1 Arabidopsis thaliana At3g15270 mRNA for squamosa promoter binding protein-like 5, putative, complete cds, clone: RAFL19-86-N19.
GenBankAJ2429601e-158AJ242960.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5, (SPL5 gene).
GenBankAJ0116101e-158AJ011610.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665194.11e-130PREDICTED: squamosa promoter-binding-like protein 5
SwissprotQ9S7582e-93SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A078H0S41e-130A0A078H0S4_BRANA; BnaC01g36290D protein
STRINGBra021094.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.16e-82squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]