PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051488001
Common NameGSBRNA2T00051488001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 154aa    MW: 18024.4 Da    PI: 10.8527
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051488001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1697.4e-2242101463
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          l r+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+ e+
  GSBRNA2T00051488001  42 LSRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTFEN 101
                          78*****************************************************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-1839103IPR004827Basic-leucine zipper domain
PfamPF001704.1E-2042101IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-164298No hitNo description
CDDcd147021.98E-154494No hitNo description
PROSITE profilePS5021712.35844104IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-114498No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MELTLKVGRV LLMVQVKEVM QTLKITLDLD NTTGRMHLES CLSRQRRKQS NRESARRSRL  60
RKQAECDELA QRAEVLNEEN ASLREEINKL RSQCEELTFE NTSLNSRTNF YHSLHLKALT  120
WTRTSKNHQT SLKNTSSSNN NNNTRRFFAN RWL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13446RMHLESCLSRQRR
25561RRSRLRK
35562RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225462e-31seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051488001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531648e-36AK353164.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022557789.12e-54bZIP transcription factor 16-like
TrEMBLA0A078H5N51e-104A0A078H5N5_BRANA; BnaC04g44430D protein
STRINGBo4g183320.17e-62(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2683933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.15e-34basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]