PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050804001
Common NameGSBRNA2T00050804001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 507aa    MW: 54258.8 Da    PI: 7.3552
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050804001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1488126241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  GSBRNA2T00050804001  88 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCFNNVD 126
                          689*************************.********986 PP

2TCR51.32.3e-16172211140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C +CkN e
  GSBRNA2T00050804001 172 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 211
                          589***********************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-1587127IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.6188212IPR005172CRC domain
PfamPF036388.6E-1189124IPR005172CRC domain
SMARTSM011147.8E-20172213IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-13175210IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP MIPPLQSPQV  60
PIRLPKPESP KPKPRPVVVE AGDGTPMKKK HCNCKHSRCL KLYCECFASG TYCDGCNCLN  120
CFNNVDNEPA RREAIESTLE RNPNAFRPKI ASSPHDPRDN REVVGGVVML GKHHKGCHCK  180
KSGCLKKYCE CFQANILCSD NCRCLGCKNF EGSEDRLALF HGEHSHGAAY LQHANAAITG  240
AVGSSGFASS PAPKRRKSQD IFFNQAAKDS SINRLGQGSS GKTTSSKPVA RHGGPSKVVY  300
RSLLADIIQP QDVKALCSVL VAVSEEAAKT STVKRLEDQT ETSLASSAQD NNNGTEIEKA  360
ASGNEAGADE SNSDGSKGKS LSPETLALMC DEQDTMLMVA ASSNCSVEPP NGQDQGYAEK  420
EKIVLTKFRD CLNRIISYAE LKESKCSLSR MDTESPVHAA VKTEPVVQQG EVANGVSQTT  480
IQQPSQLTSS YTQTQQPQAP SEKKDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-308922111132Protein lin-54 homolog
5fd3_B3e-308922111132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050804001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511406.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A078H2G30.0A0A078H2G3_BRANA; BnaA07g00040D protein
STRINGBra041042.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]