PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045367001
Common NameGSBRNA2T00045367001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 291aa    MW: 32831.9 Da    PI: 4.4727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045367001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-1511102399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           ++ ++dv+ s+rlvlp ++ + +    + ++t +l+ ++g+ W+vk     ++++ + +++GW++F  +n+  +gDf+ F++dg+++f 
  GSBRNA2T00045367001  11 IIFNSKDVSLSQRLVLPSDYRQYYP--APLPQTAVLRKPEGNFWTVKW--AISQEEeISFGDGWSKFIAENDPIDGDFLQFSYDGSRSF- 95 
                          56667899999********974444..55899****************..444444499************************998888. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                           +v++fr+
  GSBRNA2T00045367001  96 -LVSIFRN 102
                          .****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-185102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-176102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-157101No hitNo description
PROSITE profilePS5086313.6349103IPR003340B3 DNA binding domain
SMARTSM010191.0E-149103IPR003340B3 DNA binding domain
PfamPF023622.2E-139102IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-5194277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-4194277IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVFTPYPDFL IIFNSKDVSL SQRLVLPSDY RQYYPAPLPQ TAVLRKPEGN FWTVKWAISQ  60
EEEISFGDGW SKFIAENDPI DGDFLQFSYD GSRSFLVSIF RNGLPVKPTA PVTIQDISDD  120
DEDKTAGDGD EKKEEEDYDQ NMIISLSLGS SDEDYDADKT VSEVNKADGT LKRGSSSQRI  180
RAQSIGDPEM YLDDPKNPCF IATSSSCRRM LVIAMQVIKD YDLKFDGTIK FIDGFGELEG  240
KIGNWKDRVV VYSWQEIYNR NHAKPGDVII CEILREGGVV RSIKAHFVKK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045367001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.10.0PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH11e-117Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A078JII40.0A0A078JII4_BRANA; BnaA02g35370D protein
STRINGBra020417.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-109B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]