PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043306001
Common NameGSBRNA2T00043306001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 250aa    MW: 28998.7 Da    PI: 7.0634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043306001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1445e-14135194463
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           k+ +r+++NRe+A+rsR RK+  i +L++ v +L+ eN++Lk++l+ l+ + +++ +++
  GSBRNA2T00043306001 135 EKKRKRMESNRESAKRSRMRKQSHINNLRNQVNQLDMENRELKNRLQLLTYQLQRVNTDN 194
                          6999*********************************************99998877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-13126190No hitNo description
SMARTSM003383.0E-15132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.806134197IPR004827Basic-leucine zipper domain
PfamPF001702.5E-11135188IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-11136189No hitNo description
CDDcd147021.87E-17137184No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLSTVPAFSM SEPGLVNQFQ GFQTGFTPWE WDCSDLFSVN QLSLEPAVPS PCFAESDSGL  60
VKIKSGFDDI KPGSDENYTG FIKTKPGFDE AQSSHGVPDE PDSDDPKQWT AIVSLHSGEQ  120
NHNRNKLIQP EMTEEKKRKR MESNRESAKR SRMRKQSHIN NLRNQVNQLD MENRELKNRL  180
QLLTYQLQRV NTDNIQLVAE QDILRLRLSE MRRILMIRRQ QQWELNNRRM IMTEQNPSTI  240
MDHMIYISK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043306001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572841.10.0basic leucine zipper 63-like
TrEMBLA0A078GVQ00.0A0A078GVQ0_BRANA; BnaA03g54260D protein
STRINGBo7g118720.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-107basic leucine-zipper 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]