PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042123001
Common NameGSBRNA2T00042123001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 295aa    MW: 33475.7 Da    PI: 8.0349
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042123001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-193292357
                         --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+t+t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  GSBRNA2T00042123001 32 TRWTPTTDQIRILKDLYYNngVRSPTADQIQKISARLrqygKIEGKNVFYWFQNHKARERQ 92
                         8*****************8678*************************************97 PP

2Wus_type_Homeobox113.69.8e-373094265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++tRWtPt++Qi+iL++ly+ +G+r+P++++iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
  GSBRNA2T00042123001 30 TSTRWTPTTDQIRILKDLYYnNGVRSPTADQIQKISARLRQYGKIEGKNVFYWFQNHKARERQKK 94
                         789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-8792IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1122100IPR009057Homeodomain-like
PROSITE profilePS5007110.3172793IPR001356Homeobox domain
SMARTSM003891.0E-52997IPR001356Homeobox domain
CDDcd000862.80E-73294No hitNo description
PfamPF000468.6E-173292IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEPAQHHHQA DQESGNNNKS VSGGYTCRQT STRWTPTTDQ IRILKDLYYN NGVRSPTADQ  60
IQKISARLRQ YGKIEGKNVF YWFQNHKARE RQKKRFNSTT MTIPTSSSPN SVMMASDHYH  120
HNHHHHGVTI QRPALVNVKL DQENHMFHQN RSYPSFNNGN TNHASSGTEY GVFSASNGYI  180
SSHIYEPMEQ DCSMSYNNVG GGWTNIDHNH HYSTPAYNFL DRPMPLSGLE GHHQEEGEYG  240
GDAYLEHRRT LPLFPLHGED HINGGGGSIW KYRQSDGCDR YGRGPCASLK LCLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042123001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324670.0AC232467.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB024N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627198.10.0PREDICTED: protein WUSCHEL-like
RefseqXP_013681940.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ9SB921e-139WUS_ARATH; Protein WUSCHEL
TrEMBLA0A078GVP40.0A0A078GVP4_BRANA; BnaA06g25450D protein
STRINGBra024485.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-121WOX family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]