PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042036001
Common NameGSBRNA2T00042036001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 375aa    MW: 42312.9 Da    PI: 9.6331
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042036001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.84e-072432791753
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                          A+rsR RK+++i eLe+ v++L+ae ++    l+ l+
  GSBRNA2T00042036001 243 AQRSRVRKLQYISELERTVQALQAEGSKVSADLDFLN 279
                          89***********************988777777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-5227302No hitNo description
CDDcd147032.67E-14235282No hitNo description
SuperFamilySSF579592.56E-5243285No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MASSKGTQSV KDLMHPGKNA LLPPKIPFPT VSAPYSEYIP LGSRHHGHKL NDEKPHHHHH  60
HQRTSSESDL VEEPPFWLDD LLNEPESPVR KCGHRRSSSD SYAYLDMANA KNISLTLQND  120
FSYRNTGSST QRGGVHELDW NQNAQGAAFY SDSNFLKQTN RQRDSLVVAS GPRPSWQPFT  180
RESVGGKHMG SSSYMPQEAP ETKNYAKTLS HDAKKFSPEQ KNSNAQPVTC DADNTRRAKQ  240
QFAQRSRVRK LQYISELERT VQALQAEGSK VSADLDFLNQ RNLILSMENK ALKQRLESIA  300
QEKLIKQMEQ ELLEKEIGRL RALYQQQQQT QQPPASHKRA SSKDLDSQFS SLSLNSKDSN  360
SSRDSVSVTS QFHF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106780.0microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042036001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661721.10.0uncharacterized protein At4g06598
RefseqXP_013661722.10.0uncharacterized protein At4g06598
TrEMBLA0A078GVJ80.0A0A078GVJ8_BRANA; BnaC09g15590D protein
TrEMBLA0A3P6EBH70.0A0A3P6EBH7_BRAOL; Uncharacterized protein
STRINGBo9g052080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-171bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]