PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041590001
Common NameGSBRNA2T00041590001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 355aa    MW: 40201.9 Da    PI: 5.8637
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041590001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.2e-38852352128
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaessss 80 
                          a+kkdrhskihT++g+R RRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +aikel++           +++  + + e++    
  GSBRNA2T00041590001  85 AVKKDRHSKIHTAQGLRERRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnnnvedfGNEGGNVVhEED---- 170
                          89**************************************************************4443333322111112222111.... PP

                  TCP  81 sasnsssg.......................kaaksaakskksqksaasalnlak.esrakarararertre 128
                                 +                       ++   + k+ +++k++++++n +   sraka+ +a+  tr+
  GSBRNA2T00041590001 171 -------DydydddnvgdnnfvyglspysfeEEVLCEVKKAEKRKKKTEMSNTSSkGSRAKAKGKAKGLTRD 235
                          .......12233444556788999999999744444445555555555666665559999999999887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3686234IPR005333Transcription factor, TCP
PROSITE profilePS5136933.93987145IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSSNNGYNN GSNNGVFPLS LYLSSLSGHQ DIICNPYNHQ LTASPGQMVS AVPESLMDYM  60
AFNSNNVMNQ QGFEIPEVSR EMKKAVKKDR HSKIHTAQGL RERRVRLSIG ISRQFFDLQD  120
MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN EGGNVVHEED DYDYDDDNVG  180
DNNFVYGLSP YSFEEEVLCE VKKAEKRKKK TEMSNTSSKG SRAKAKGKAK GLTRDMINDH  240
PETASEIIQT EIMDPFKRSI IFNEGEEMTH SFYKESIQES DNHECITKTK VNLPMNMDQG  300
YNQHYGALML KDQGSSSNYN AILPQNLDCD YNPNPFIDQL FCGVTNTNFF RGIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1492145154Putative transcription factor PCF6
5zkt_B4e-1492145154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041590001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590902.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013590903.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013590904.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013722428.10.0transcription factor TCP1-like
SwissprotQ9FYG71e-158TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A078GW880.0A0A078GW88_BRANA; BnaC06g26860D protein
STRINGBo6g099040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-138TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]