PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00039766001
Common NameGSBRNA2T00039766001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 152aa    MW: 16161.7 Da    PI: 9.7016
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00039766001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.43.4e-15531431103
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++c eav++++l+la+al++++  la +++ +m+++a yf+     r  +   +   +l+++ +s+    +   + +   e++P+
  GSBRNA2T00039766001  53 LVHALMACSEAVQTSNLTLAEALIKQIGFLAGSQAGAMRKVAMYFAAS---RGGS---S--VSLRCKLKST----NLSLIISRCDETCPY 130
                          689******************************************964...3333...2..3367776652....2333334479***** PP

                 GRAS  91 lkfshltaNqaIl 103
                          lkf+h+ta qaIl
  GSBRNA2T00039766001 131 LKFAHFTAKQAIL 143
                          ************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.49227151IPR005202Transcription factor GRAS
PfamPF035141.2E-1253143IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVTSSSPATQ IGGIIRTTVT TTTASESTRH VILVDLQDNG VRLVHAQDNG VRLVHALMAC  60
SEAVQTSNLT LAEALIKQIG FLAGSQAGAM RKVAMYFAAS RGGSSVSLRC KLKSTNLSLI  120
ISRCDETCPY LKFAHFTAKQ AILFPTNTYL I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598468.13e-39PREDICTED: DELLA protein RGA1
SwissprotQ5BN232e-39RGA1_BRACM; DELLA protein RGA1
TrEMBLA0A078JFU31e-108A0A078JFU3_BRANA; BnaC09g53060D protein
TrEMBLA0A0D3E8P31e-108A0A0D3E8P3_BRAOL; Uncharacterized protein
STRINGBra024875.1-P6e-37(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-34GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]