PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00039036001
Common NameGSBRNA2T00039036001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 238aa    MW: 27133.9 Da    PI: 10.5701
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00039036001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-14160210555
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                          +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ k+
  GSBRNA2T00039036001 160 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKT 210
                          79***************************************9887776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-11156214IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461158209IPR004827Basic-leucine zipper domain
PfamPF001701.5E-11160211IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-13160209No hitNo description
SuperFamilySSF579591.0E-9160209No hitNo description
CDDcd147071.21E-20160212No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MNMDELLKNI WTAEETTQPI MTTTSSIASV QQPRGLVQRQ GSLTLPRTLS QKTVDEVWKH  60
LMSKDSCNGR DAPERQETLG EMTLEDFLLR AGVVKEDGNN SSMILNQAQQ PHQQQLQQPH  120
QRLPPTIYPK HANVTFSAPV MGKAGGRRSN TGVVEKVVER RQKRMIKNRE SAARSRARKQ  180
AYTLELEAEI ENLKQLNQDL QRKQAEIMKT QKNEEPSKQR PWLAKTQCLR RTLTGPW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00039036001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228921e-152JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591825.11e-149PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X2
SwissprotQ9M7Q59e-99AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLA0A078GTX21e-174A0A078GTX2_BRANA; BnaC06g02640D protein
STRINGBo6g018480.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.12e-84abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]