PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038835001
Common NameGSBRNA2T00038835001, LOC106454738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 148aa    MW: 17009.7 Da    PI: 7.5045
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038835001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22.1e-4254131178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqve+C+ad+s+ak+yhrrhkvCe+h+kapvv + gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+++
  GSBRNA2T00038835001  54 ACQVERCTADMSRAKQYHRRHKVCEFHAKAPVVRIYGLHQRFCQQCSRFHELGEFDESKRSCRRRLAGHNERRRKSAS 131
                          5**************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375756.9E-571141IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.104.0E-3347116IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.08652129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.65E-3854131IPR004333Transcription factor, SBP-box
PfamPF031102.5E-3255128IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSMKGSKAEA KRSLREMSEE EEEDTFEEEE DEEEALEKKQ KGKATSSSSS SAGACQVERC  60
TADMSRAKQY HRRHKVCEFH AKAPVVRIYG LHQRFCQQCS RFHELGEFDE SKRSCRRRLA  120
GHNERRRKSA SEGEGERSQD HIGYQGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3946128284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752305.11e-102PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930151e-59SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLA0A078GMY51e-102A0A078GMY5_BRANA; Squamosa promoter-binding-like protein
STRINGBra005470.1-P8e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.18e-53squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]