PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038832001
Common NameGSBRNA2T00038832001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 690aa    MW: 75439.6 Da    PI: 8.2095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038832001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07152172526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ffa+ G C  G++C+F H+
  GSBRNA2T00038832001 152 PCKFFAQ-GRCTKGNSCRFLHV 172
                          7******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0043147173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-6147171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76147174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5152173IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4152172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MSDSDMDIDD DEVQVQVQPT AAGESRLLAR PIEASNSQND VKKHSDEQLK IINGNLQPNL  60
SGNSGKNPIL EGEKGTILPS LRFPAPGQSF PLVNGPEQSK IINGYLQPNL SGSSGKKLML  120
EGEKDTVLSR FPAPMQTLPP ANGPEQKRPA YPCKFFAQGR CTKGNSCRFL HVNENMNRTS  180
QQQVVNNMAG TSGIQSIEER RPLESKEGVR FSMLSTNGVT SLVNPPAGQR VFPFTNEMRF  240
MPSLENMGRG SLQKCGAVFT ENRPVFGNST SSFPLRSSFV QEHGSFITSN RQTDMGSSGP  300
AWTGSVFSSA PLNQYASPFG NFENRNDINE SGSLPMEQAL SVPSVQDAEV DTTSDKKEVS  360
SNDWEPSEPF RPSFTIPPYI LPSSDALYDP FMDIENPEGR SPKAQSSTKG KDAQKKSGQQ  420
KDGDSASNDK NSSCSQNQFQ ETVVRKKLET HGLVEGVATS VVDQNDASAT TPSKEISSSA  480
AVENRAVLKR SKPAGHGSWH RSDGSSHQKK LKTDEMDGEV RSDAGTKVMR QFRTAVVETI  540
KDMLKPLWRE GRLSKDVHNM IVKRATEKIV SAAVQLHQVP TNNESVEKYL SMSSTRIVKL  600
VEGYVEKFGK PQSKPSGLAP IFLHLHSYPF TNNGRRLELE LCRGILCLFG IASEAGEGGN  660
RKKRNSVEGT LSNILTMFLC LRTIQIVSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106438e-71microspore-derived embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748521.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A078GS050.0A0A078GS05_BRANA; BnaCnng05170D protein
STRINGBra005468.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]