PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038536001
Common NameGSBRNA2T00038536001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 268aa    MW: 31209.1 Da    PI: 8.7138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038536001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-171150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n+s r+ tf kR++g +KK +ELSvLC+++++ +i+s+
  GSBRNA2T00038536001 11 ITNDSMRKSTFNKRKKGFFKKIHELSVLCGIQACAVIYSP 50
                         89************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.353149IPR002100Transcription factor, MADS-box
CDDcd002667.51E-34285No hitNo description
SuperFamilySSF554554.06E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTRKKLNISY ITNDSMRKST FNKRKKGFFK KIHELSVLCG IQACAVIYSP FSSTPDVWPS  60
NSEAKKVVEK FEEIPKIDQE KKMVNHEGFL RDSITKTRET TIKKMMDNTE SAMNETMFQF  120
LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMTQPAAI  180
AEEGYYQMTN PVGGYHQHPS LNLNFNPNQY QQKFVGYPNV AQDGNYSGIQ NQNHQQEEWL  240
VSQMINNSNQ VRFPMMDDNN RYNYHQP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038536001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147196.10.0PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
SwissprotQ9FJK34e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078GME90.0A0A078GME9_BRANA; BnaA05g31440D protein
STRINGBra039404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.11e-107M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]