PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038423001
Common NameGSBRNA2T00038423001, LOC106449728
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 305aa    MW: 34252.5 Da    PI: 5.0961
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038423001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573124.54.8e-39104199397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                          fqr+w+eeDei++LqG+idfk++tg+sp++d +a+y+ vkks+sf+v+k+q++eKir  KkKf+++  + +k+gk+psfsk+hd+k+f+l
  GSBRNA2T00038423001 104 FQRVWTEEDEIAVLQGIIDFKNETGSSPYEDKNALYDLVKKSVSFDVTKTQFMEKIRASKKKFENNLGRgKKKGKDPSFSKAHDRKAFDL 193
                          9*******************************************************************98899***************** PP

               DUF573  92 skkiWg 97 
                          +k +Wg
  GSBRNA2T00038423001 194 AKLVWG 199
                          *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-33104199IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSGKLLKKLE DPPIASSSSE EEEDEDAVAN SSSEEEEEEE AEPVAKPLVK PPANSIKVET  60
SSKPETKKKR SSETDEVEAK RVKRVSGEDD KKSTGEEETK KSCFQRVWTE EDEIAVLQGI  120
IDFKNETGSS PYEDKNALYD LVKKSVSFDV TKTQFMEKIR ASKKKFENNL GRGKKKGKDP  180
SFSKAHDRKA FDLAKLVWGD NGIMALEPLS AVKSKKVEPA VKKQEEPVAV MNQEFVPIVD  240
LVARFGVDDL AAKQGWSRLS SKDRERFEEQ WKELQLKEFK LYSQKSGFIN EVVTKMAEAS  300
QPDH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281160.0microspore-derived embryo| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746889.10.0PREDICTED: mediator-associated protein 1-like isoform X1
RefseqXP_013746891.10.0PREDICTED: mediator-associated protein 1-like isoform X2
TrEMBLA0A078GR760.0A0A078GR76_BRANA; BnaUnng00070D protein
STRINGBra025445.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-54DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]