PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037906001
Common NameGSBRNA2T00037906001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 259aa    MW: 29810.9 Da    PI: 6.554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037906001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.7e-23114174259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  GSBRNA2T00037906001 114 HDGFLWRKYGQKQIKESDHQRSYYKCAYTsdqKCEAKKQVQMIQNNPPLYSTTYFGRHTCQ 174
                          6*************************9988889**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-24106174IPR003657WRKY domain
PROSITE profilePS5081119.657108176IPR003657WRKY domain
SuperFamilySSF1182907.45E-23110175IPR003657WRKY domain
SMARTSM007749.1E-33113175IPR003657WRKY domain
PfamPF031067.6E-23115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MESCQQKVME KLLHGHGCAS QLKLIMDHHA ESDSSMERED LAKSVLHCFS DALSILIDTN  60
DHNKDDDKSN NSSPQDSSHV LESSRKPFHK RGRKTSMAES SDYRRHESPN PIYHDGFLWR  120
KYGQKQIKES DHQRSYYKCA YTSDQKCEAK KQVQMIQNNP PLYSTTYFGR HTCQLHQAFE  180
TFPIDTSDLQ DSRMIRFDNP DSSTHQHQNQ IIHHKVEQMM PSEKAEEWSS PSEYMSSEVA  240
YAVEAFGFNP ARTSSDLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300690.0KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022569876.10.0probable WRKY transcription factor 62
SwissprotQ9LZV61e-134WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLA0A078JDN60.0A0A078JDN6_BRANA; BnaCnng41380D protein
STRINGBra023211.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-121WRKY DNA-binding protein 62
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]