PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037616001
Common NameGSBRNA2T00037616001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 412aa    MW: 47373.2 Da    PI: 9.2931
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037616001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.7e-391513182135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 
                          + ++drhski T +g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                         +
  GSBRNA2T00037616001 151 PSRTDRHSKIKTVKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPKIIKIANSlsnkfnhgrfsscdesqprpalglmD 240
                          5799************************************************************99999988888888766666666552 PP

                  TCP  67 sssa....sec....eaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                          +ss     s++    +       +s    +           ++++   k++ sq ++    +l+k+ rakar+ra++rt+ekm++++ 
  GSBRNA2T00037616001 241 TSSDifelSSMwtveD------RGS----NtnmnetrgnkvDRRSVRGKRRMSQPRTPILKKLSKDARAKARERAKDRTKEKMMKRSA 318
                          2222333222232211......222....12233455666644444447777777777789**********************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-39152315IPR005333Transcription factor, TCP
PROSITE profilePS5136931.237153211IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.607295312IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNDNKTFSTT TTINEEYMLF PYNDHYSSQP LLPFSPCSSI NDILIHSNTS NNHLDHHHHQ  60
YLQAPASPFS HFESVPDFAL LASFLPQKNG HNDNQTITTN DHHHPPSFLP FNNPFGESHL  120
IEPSETKTTH IEDSQRISTS QDPNMKKVKK PSRTDRHSKI KTVKGTRDRR MRLSLDVARE  180
LFGLQDMLGF DKASKTVEWL LTQAKPKIIK IANSLSNKFN HGRFSSCDES QPRPALGLMD  240
TSSDIFELSS MWTVEDRGSN TNMNETRGNK VDRRSVRGKR RMSQPRTPIL KKLSKDARAK  300
ARERAKDRTK EKMMKRSAQV NVVVEEEVHN HHDEIVQKNN KSNVKATPCE ETIQEPLCKN  360
DRFAVCNEIV VDRKYHISDE FNPSFPMLDH HRSQWAASSI EFYRLSQIPI Y*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}.
UniprotTISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037616001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680784.10.0transcription factor TCP18-like
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A078JD660.0A0A078JD66_BRANA; BnaC05g51920D protein
STRINGBo5g117410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-170TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  6. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  7. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  8. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  9. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  10. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  11. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]