PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037260001
Common NameGSBRNA2T00037260001, LOC106420704
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 87aa    MW: 10342.9 Da    PI: 10.0547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037260001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-102969345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         ++++eE++l+ +  k+ G + W++Ia +++ gRt++++  +w+
  GSBRNA2T00037260001 29 KMSEEEEDLISRMYKLVGDR-WELIAGRIP-GRTPEEIERYWL 69
                         689***************99.*********.***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-82674IPR001005SANT/Myb domain
PfamPF002491.1E-92970IPR001005SANT/Myb domain
CDDcd001671.05E-62970No hitNo description
Gene3DG3DSA:1.10.10.602.0E-113169IPR009057Homeodomain-like
SuperFamilySSF466892.89E-83169IPR009057Homeodomain-like
PROSITE profilePS500906.7713168IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MDRRRRKQSK AKASCSEAEV SSIEWEAVKM SEEEEDLISR MYKLVGDRWE LIAGRIPGRT  60
PEEIERYWLM KHGLVFANKR REFVRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037260001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195214e-76AY519521.1 Arabidopsis thaliana MYB transcription factor (At2g46410) mRNA, complete cds.
GenBankAY0746374e-76AY074637.1 Arabidopsis thaliana At2g46410/F11C10.10 mRNA, complete cds.
GenBankAB0048714e-76AB004871.1 Arabidopsis thaliana mRNA for CPC, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716991.13e-56PREDICTED: transcription factor CPC isoform X1
SwissprotO220593e-52CPC_ARATH; Transcription factor CPC
TrEMBLA0A078GQ393e-56A0A078GQ39_BRANA; BnaC04g50810D protein
STRINGBra004539.1-P5e-51(Brassica rapa)
STRINGBra039283.1-P6e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32328194
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-51MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]