PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036925001
Common NameGSBRNA2T00036925001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 280aa    MW: 29978.3 Da    PI: 5.7473
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036925001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.86.5e-37461442103
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          a+k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++    +   +  ++s +  
  GSBRNA2T00036925001  46 APKRPPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsV--NGALKIPTDSTP-- 131
                          799*************************************************************9999955421..222222222222.. PP

                  TCP  91 aksaakskksqks 103
                          + ++  ++ ++++
  GSBRNA2T00036925001 132 QFESDGGSGKRRR 144
                          1222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.77652106IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-2952128IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESNLEGKVV HLSDPDPETN RGMLLKQEDD DPNKQQEVGF LQPVTAPKRP PSKDRHTKVE  60
GRGRRIRMPA GCAARIFQLT RELGHKSDGE TIRWLLERSE PAIIEATGTG TIPAIAVSVN  120
GALKIPTDST PQFESDGGSG KRRRRNCTSE FVDINRQDSS VTSGLAPITA SSYGVNLMNV  180
NAQSFVPFWQ TGFVTGGPNQ MGHMWAIPTV AAPSFLNGGG TRPVPSYVSN TSDAEPQMGT  240
SGGGGDEGTT QTLRDFSLET YDKKELQFLG GSGDNTSPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.154901e-110flower| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036925001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022557273.10.0transcription factor TCP19-like isoform X2
SwissprotQ9LT891e-126TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A078GPG30.0A0A078GPG3_BRANA; BnaA02g11190D protein
STRINGBra022568.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-121TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]