PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036312001
Common NameGSBRNA2T00036312001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 229aa    MW: 26560.8 Da    PI: 9.1501
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036312001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.42.6e-3232140197
                          EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                          f+k ltpsdv+k++rlv+pk++ae+h             + +e+++ lt+edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD
  GSBRNA2T00036312001  32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnagddvaaAETTEKGMLLTFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLHAGD 121
                          99******************************99999977788*********************************************** PP

                          EEEEEE-SSSEE..EEEEE CS
                   B3  79 fvvFkldgrsefelvvkvf 97 
                          +v F++++ +  + +++++
  GSBRNA2T00036312001 122 VVFFQRHRFDLHRVFIGWR 140
                          *****54325555566665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4027149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3229144IPR015300DNA-binding pseudobarrel domain
CDDcd100179.21E-2931136No hitNo description
PfamPF023621.4E-2932141IPR003340B3 DNA binding domain
SMARTSM010198.5E-2432143IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21132141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSGNHYSRDI QHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL  60
NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG  120
DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST  180
SSYPNIHQEY SHYGKTLYLL SQFVFCYFSL IHVSDIYTLS VFKDMCHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-472914211117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732085.11e-144PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-103Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A078JDE11e-173A0A078JDE1_BRANA; BnaC01g44850D protein
STRINGBra041023.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.21e-106B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]