PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035784001
Common NameGSBRNA2T00035784001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 183aa    MW: 21104.7 Da    PI: 9.9543
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035784001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.8e-11108164458
                          XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          ++r  r+ kNRe+A rsR+RK++  +i eLe ++  L++eN +Lk + e+++ ++a+
  GSBRNA2T00035784001 108 DRRHNRMTKNRESAARSRARKQEraYINELELEIVHLKKENARLKRQEEQMQLKMAE 164
                          78999****************963379***************999887777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-10100163No hitNo description
SMARTSM003382.9E-6105171IPR004827Basic-leucine zipper domain
PfamPF001703.3E-8108159IPR004827Basic-leucine zipper domain
CDDcd147076.82E-22109161No hitNo description
SuperFamilySSF579591.93E-7109162No hitNo description
PROSITE patternPS000360113127IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTQVTMEEVW KDINLASLHP HRQLNIDHEP VLSNQTPNKS IFQDFLNKPL NQEPPPSSSS  60
THHGSLLAPP ATVISLNTHF IDTHFDESAM FGCFGKKRGQ DSDDSRGDRR HNRMTKNRES  120
AARSRARKQE RAYINELELE IVHLKKENAR LKRQEEQMQL KMAEATQHQT KKILQRSWTS  180
PF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035784001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771481e-37GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661483.11e-131bZIP transcription factor 27-like isoform X1
RefseqXP_013685465.11e-131bZIP transcription factor 27-like isoform X1
RefseqXP_013693795.11e-131bZIP transcription factor 27-like isoform X1
SwissprotQ7PCC62e-79FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A3P6DQP61e-134A0A3P6DQP6_BRAOL; Uncharacterized protein (Fragment)
STRINGBo9g024710.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.22e-67basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]