PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035638001
Common NameGSBRNA2T00035638001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 377aa    MW: 42878.7 Da    PI: 6.1117
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035638001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-22953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++++++fs+tgk
  GSBRNA2T00035638001  9 KRLESTGNRQVTYSKRKCGILKKAKELSILCDIDILLLMFSPTGK 53
                         6889***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.656153IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-17323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-191254IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRVKLEIKR LESTGNRQVT YSKRKCGILK KAKELSILCD IDILLLMFSP TGKPTMLHGQ  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD INIPEFLGAR NQTIESLSNQ  120
VAIFQAQLME CHRRLSCWTN IDRIENTEHL TLLEESLRKS IERIQFHKEH HGKNQLLPIE  180
CTTTQFHSGI LPLAMGDNNS MQEAHSMSWL PDKDNQQTIL PGDSSFIPHR EMDGSIPVYT  240
NCFFESVKQE DQKCINPGQQ FELLGQQGNG FLGLQQIGEE YSYPTPFGTT LGMEEDQENE  300
IKTEMAFKNL QQQQDPSSMF DPTASSSSCF QIPLDQPMFA TDLHHHQNWV SGSMFGQTSY  360
NQVCVSHLTL EISMAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-13196194MEF2C
5f28_B4e-13196194MEF2C
5f28_C4e-13196194MEF2C
5f28_D4e-13196194MEF2C
6byy_A4e-13192190MEF2 CHIMERA
6byy_B4e-13192190MEF2 CHIMERA
6byy_C4e-13192190MEF2 CHIMERA
6byy_D4e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035638001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1431720.0AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149363.10.0PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I00.0AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A078GNG10.0A0A078GNG1_BRANA; BnaA06g12900D protein
STRINGBra025685.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.10.0AGAMOUS-like 65
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]