PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034226001
Common NameGSBRNA2T00034226001, LOC106445229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 465aa    MW: 51705.4 Da    PI: 7.4676
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034226001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.8e-1385146263
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           + k+e r+ +NRe+A  sRqR+k ++eeLe+kvk+L++  ++L ++++    e a+l+ +v
  GSBRNA2T00034226001  85 DDEKKEARLVRNRESALLSRQRRKHYVEELEDKVKNLQSVITDLNSKVSYFASENATLRHKV 146
                          5679*********************************************9999999998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-1284148IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.11786143IPR004827Basic-leucine zipper domain
PfamPF001702.8E-1287146IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.77E-1188144No hitNo description
Gene3DG3DSA:1.20.5.1708.3E-1588146No hitNo description
CDDcd147044.59E-1889140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAEPAVDSFY NSSFELGNSI SDLDVDFELT FEDLYFPSEG ESFFIPVEVE EKATTTCKTS  60
MTKRKNEIEE DTSRSYKYRR MDEEDDEKKE ARLVRNRESA LLSRQRRKHY VEELEDKVKN  120
LQSVITDLNS KVSYFASENA TLRHKVGPGK GMCWPPCGMY LGSGQVVPLL PIPRLKPQRS  180
VAKVKKTKKV ASVSVLGLLF CLFLFSALAP IIVNVSYGGR VLDVSVNNSS ELLVASLFVP  240
RNEKLVKLDG NLIIHSISAS EKDTASETKP ARRSSDSTNI RDMSKHLNTE KQKAFPSSCS  300
DDSKEKLNST TSNGEMQQWF REGVAGPMFS SGMCTEVFRF DVSSTSGAIR PASQQPKNTT  360
DTHKGKNNRR ILRGGHPLSD SNLTKDQNNS SKDNFSTTKP FPSMVVSVLT DPREEGSDED  420
INGVTGDTKS LSRLFIVVLV DSVKYVTYSC VLPRPEEVPH LVTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194106RNRESALLSRQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.168669e-39flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034226001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631426.10.0PREDICTED: bZIP transcription factor 49
RefseqXP_013742200.10.0bZIP transcription factor 49
SwissprotQ9LXX41e-150BZP49_ARATH; bZIP transcription factor 49
TrEMBLA0A078J5K30.0A0A078J5K3_BRANA; BnaCnng38290D protein
TrEMBLA0A0D3BXH10.0A0A0D3BXH1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CGS50.0A0A3P6CGS5_BRAOL; Uncharacterized protein
STRINGBo4g112860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2027756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.11e-132basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]