PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028675001
Common NameGSBRNA2T00028675001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 340aa    MW: 37826.5 Da    PI: 6.6351
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.11.7e-12138196563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r ++NR +A rs +RK  +i +Le++v++L+ae  +    l+ ++  +a l se+
  GSBRNA2T00028675001 138 KRAKRIMSNRQSAARSKERKARYIMQLERRVQTLQAEYATRSAHLSLINTDIAGLLSEN 196
                          9************************************9999999999999999988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-13134198IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.484136199IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.19E-9138192No hitNo description
Gene3DG3DSA:1.20.5.1708.7E-7138174No hitNo description
PfamPF001701.9E-11138196IPR004827Basic-leucine zipper domain
CDDcd147036.42E-19139190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDHDPSNAKP NQHPPLTNPS PTSFRGPNHR RAHSEVQFRL PEDLDLSETF SGFDDLGSED  60
DLFCSFMDIE NLGSGPGNNN PFPAENGGGG GREEEGGSSR PRHRHSVSVD GSSSLESIEA  120
KKPMTPEKLA ELWVVDPKRA KRIMSNRQSA ARSKERKARY IMQLERRVQT LQAEYATRSA  180
HLSLINTDIA GLLSENTELK LRIQAVEQKA KLRDALNEKM KKEAERLRFA AAGQVSHSDA  240
YNLQVARMQY SQQQSFFQQQ ADAQNMQQMT PQFHLFQPNN NNNNNQNPQL MHHATSNASG  300
QSHSYSEEVH EDHLGSLQGL DISNGSNFGR SSESSSSTM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028675001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622338.10.0PREDICTED: transcription factor RF2b-like
SwissprotO228731e-158BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A078GHP70.0A0A078GHP7_BRANA; BnaC03g22760D protein
TrEMBLA0A0D3B6320.0A0A0D3B632_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B0S40.0A0A3P6B0S4_BRAOL; Uncharacterized protein
STRINGBo3g035070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2331234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-110bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  4. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]