PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028380001
Common NameGSBRNA2T00028380001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 209aa    MW: 22742.4 Da    PI: 8.2857
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028380001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.82.8e-3242169489
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 
                          +++++++ h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a ++ + s++s+ +          
  GSBRNA2T00028380001  42 QTKSSKDGHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLRHAEPSIISATGTGIKPAADSVSRSQVSN-G----Fwanet 126
                          67899*********************************************************9999955522222222.1....112223 PP

                  TCP  89 ..........................................k 89 
                                                                    +
  GSBRNA2T00028380001 127 gfgivganptgggldlncgigflgfdfngssdmgfennqmpqD 169
                          3555555555556666666666666665555555555555541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-2545196IPR005333Transcription factor, TCP
PROSITE profilePS5136924.63246100IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDPKNPPNLL NPEAEVKVLN NTVEGKSKWK QKEKGKQGRE IQTKSSKDGH LKVEGRGRRV  60
RLPPLCAARI FQLTRELGHK SDGETLQWLL RHAEPSIISA TGTGIKPAAD SVSRSQVSNG  120
FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQDG VLNPLIYQQI  180
GQEQAKVLQH HHHHPHEAQQ ENADKQGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028380001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634677.11e-140PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6
SwissprotQ9FLM61e-59TCP6_ARATH; Transcription factor TCP6
TrEMBLA0A078J9871e-152A0A078J987_BRANA; BnaC01g43000D protein
STRINGBo4g140760.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.11e-57TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]