PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027826001
Common NameGSBRNA2T00027826001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 85aa    MW: 8946.1 Da    PI: 5.4278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027826001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.32.8e-075283132
                 GRAS  1 lvelLlecAeavssgdlelaqalLarlselas 32
                         l++lLl+cA++++sg+l++a+a+L +ls+l+s
  GSBRNA2T00027826001 52 LIHLLLTCANHMASGSLQNANAALDQLSHLVS 83
                         689**************************998 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1903506Biological Processregulation of nucleic acid-templated transcription
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MVATFQEDTA PSSVSSSPLQ VFSTMSLTRP TLLSSSSSSF QDLKPEERGL ILIHLLLTCA  60
NHMASGSLQN ANAALDQLSH LVSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638736.19e-49PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 3
SwissprotQ9LPR86e-38SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A078K0923e-53A0A078K092_BRANA; BnaCnng77190D protein
STRINGAT1G50420.11e-35(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-24scarecrow-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]