PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027191001
Common NameGSBRNA2T00027191001, LOC106387309
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 181aa    MW: 20118.7 Da    PI: 5.191
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027191001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42.1e-3771071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C +Ck+lrrkC+++Cv+apyf+ e+ +++f ++hk+FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +
  GSBRNA2T00027191001   7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSANFGAIHKVFGASNFSKLISNLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVS 96 
                          7***********************9979************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+++ll+e+
  GSBRNA2T00027191001  97 LQAQVVLLREQ 107
                          ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8096108IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSANFGAI HKVFGASNFS KLISNLPVHD  60
RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREQASR KFPQEDCMEQ  120
GKVLAQDMPQ DLHSWFNHVV SDSNLNQMSD VASTSMDCNE SFCSSNESLY YPESMFPWSV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3531017104LOB family transfactor Ramosa2.1
5ly0_B3e-3531017104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027191001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-143AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637274.11e-133PREDICTED: LOB domain-containing protein 14
RefseqXP_013682592.11e-133LOB domain-containing protein 14
SwissprotQ9SJW53e-99LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078GDX91e-132A0A078GDX9_BRANA; BnaC04g13650D protein
TrEMBLA0A0D3BT661e-132A0A0D3BT66_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CFM51e-132A0A3P6CFM5_BRAOL; Uncharacterized protein
STRINGBo4g052270.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.17e-84LOB domain-containing protein 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]