PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025745001
Common NameGSBRNA2T00025745001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 314aa    MW: 35099.3 Da    PI: 8.656
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025745001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.73e-32471472123
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                           g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i  l+  +++  +                    
  GSBRNA2T00025745001  47 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISNLNPIDTNFDQ-------------------- 116
                          689***********************************************************99443331.................... PP

                  TCP  92 ksaakskksqksaasalnlak.esrakararar 123
                            + + +ks++s++s l+l++ esr kar+r  
  GSBRNA2T00025745001 117 --TLSLSKSSTSESSLLSLSRtESRGKARERTA 147
                          ..1233333333333444444344444443321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-2948153IPR005333Transcription factor, TCP
PROSITE profilePS5136930.42449107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDDDDIETQ QQQQQTSRKL QRLSSDKTET RDWSNPSSRI IRVSRASGGK DRHSKVLTSK  60
GLRDRRIRLS VATAIQFYDL QDRLGFDQPS KAVEWLINAA SDSISNLNPI DTNFDQTLSL  120
SKSSTSESSL LSLSRTESRG KARERTAKDK DLQSSFTQLL TRGFDEPNRS WTGGGSTDCF  180
NPVQLMPNSN SLNHRQEPSL NHHSQNQYSF LPNYNFGISS SDSPGEAGCY SSRGTLQSNS  240
QPLFLNNNKN INQRSISSSS SSSSPMDSQS ISFFMAPPLH HHSPQLPEAF DGRLYLYYGE  300
GNRSSDDKGK ERR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1954107154Putative transcription factor PCF6
5zkt_B2e-1954107154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025745001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531566e-63AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622999.10.0PREDICTED: transcription factor TCP24
RefseqXP_013623000.10.0PREDICTED: transcription factor TCP24
RefseqXP_013623001.10.0PREDICTED: transcription factor TCP24
SwissprotQ9C7581e-131TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A078J4Z00.0A0A078J4Z0_BRANA; BnaCnng34520D protein
STRINGBo3g147760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-121TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  3. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]