PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021663001
Common NameGSBRNA2T00021663001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 2246aa    MW: 255004 Da    PI: 5.5679
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021663001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.7e-33200221283128
                  NAM    3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88  
                            GfrF+Pt+eel+++yLk+k  gk+  +ee+i+e++i+++eP+ Lp  +k+k+++  wyfFs+ + +  + k ++r+t++g+Wk tg 
  GSBRNA2T00021663001 2002 LGFRFSPTQEELINFYLKNKNLGKEWIVEEAISEININSYEPKLLPslSKIKSNDLVWYFFSPYEYT--N-KTRKRTTSNGVWKLTGP 2086
                           6************************888899***************5448888888******98654..3.456778999******** PP

                  NAM   89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 
                           ++++++k   g ++g+ ktLv+++ + ++g  t Wvmhey++
  GSBRNA2T00021663001 2087 ERKIKDKggIGGEIGIVKTLVYHERKPSSGGWTPWVMHEYHI 2128
                           ******9654557***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522003.79E-81198IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015828.8E-81896IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525407.46E-50130393IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.0E-27155402IPR002182NB-ARC
SMARTSM003822.8165299IPR003593AAA+ ATPase domain
Gene3DG3DSA:3.40.50.3001.3E-9166285IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.7E-20168183No hitNo description
PRINTSPR003643.7E-20240254No hitNo description
PRINTSPR003643.7E-20333347No hitNo description
SuperFamilySSF467857.34E-9370474IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520585.61E-31507823IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-27510810IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.6E-8574593IPR011713Leucine-rich repeat 3
PRINTSPR003643.7E-20743759No hitNo description
SuperFamilySSF522001.7E-3211531295IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101406.0E-1711551286IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010427.59911551293IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002552.5E-4211561293IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015828.0E-4511561325IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.5E-4513261576IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.7E-1913341575IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.6E-913481478IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003829.8E-413501491IPR003593AAA+ ATPase domain
CDDcd000091.65E-513561469No hitNo description
SuperFamilySSF467859.52E-615601646IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520583.91E-1416871887IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.6E-1216921892IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF1019419.15E-3919972146IPR003441NAC domain
PROSITE profilePS5100538.98720002146IPR003441NAC domain
PfamPF023652.0E-2020032128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005634Cellular Componentnucleus
GO:0005774Cellular Componentvacuolar membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 2246 aa     Download sequence    Send to blast
MTDCEKAERF VYMSCVDEVR YSFVSHLFDA LRRNGISSVF VDSGDLLSDE AQEKVERARV  60
SVVVLPANRQ VCLEKLEKVL NCQRNKEQVV IPVLYGDSIL HGEWLSAMNL RGLSPVFQSR  120
NDCSDSKLVE KIVRNVNEKL LYMGRIGMSW KLREIENMVN KQPLGIRGVG IWGMPGIGKT  180
ELAKAVFDQV SGGFDACCFI EDYDKAFHEN RLFRILVEQL MKDQPANSGS ITKKRLRRDK  240
LMNKRVLVVL DDVRNPLLAE SFLEDFEWFG PESLIIITSR DKQVFRLCRI NQIYEVQGLT  300
EKEALQLFLL CASLNDMGEQ SLHEVAMEVI KYAHGNPLAL SIYGGALKGK ETPKDMETAF  360
LELKDRPPCK LVDAIKRTYD TLNDSEKNIF LDIACFFQGE NVDYVMQLLE GCGFSPHVGI  420
DSLIEKCLVA ITENRVRMCN FTQDVGRYMI TKGATVQIEK RSRLWEPQSI KDLLEDTEDT  480
ENGEPNVTVK FAQDTQELEA IFLDTSNLSF DIKPAAFENM LNLRLLKIYC SNPETHPVIS  540
FTRGFLHSLP GELRLFHWEN YPLQSFPQKF DPRNLVEINM PYSQLKKLWG GTKNLETLKT  600
IRLCHSRQLV DIDDILKAPS LERIDLQGCT NLQIFPPSGQ LLHLRVVNLS GCAEIKNFPD  660
VPPNIEKLHL QGTSIRSLPP SLVKPNRGEL VNLLAELSGL SDALKLERLS SLEKSSSSST  720
DVGKLSCLEL KNCSSLQSLP NMFHLEFLKV LDLSGCSELE IIQGFPQNLK ELYLTGTAVR  780
EVPQLPQSLE LLNAYGCASL ESIRLDSTQL PMHYSFSNCF KLSPQVVNQF LVKALANAKH  840
IPREHPQHAH PSHMISNLIS LLEQEFDKDL AFSFCAPTHP DQDSTIDLQP GSSVMIWLTP  900
SWRSALVGFV MQVEVAFSKD YYPATGFGIK CICRWKNKEG GSHRIEKNLH CWAPGKAVLQ  960
DHMLVFCDVK MRPRTDEGND PYILADLVVF EFYPVDNQSI RLDYSFTVER CGVYVITAAT  1020
GNTSLESISP VLSLDPNISS ALTFDSMDIS CNPSEELIKA SYDDLQEIDR ALFRCVAYLF  1080
NDEDIHLVKV EPLVACIDLN VSSRLKVLAK KHLLRVSSNG VIRMLPMGKE ILHRVSIGCS  1140
EEDSEKISVA SSGCWKYDVF LSFSSQDVRK SFLSHLLKAF ISKGITMFID NEIFRRQAIS  1200
PEVLQAIRES SILIVVFSRD YASSSWLLGE LAEIAKSRKE LSQIVIPVFY YVDPWHVKTQ  1260
AGDFGRQFGQ TCKKETEDEK QRWCQALTNI ADILGISFKN WDNEADMAET IANDVSSKLN  1320
ITESEGFGEF VRIENHVSKL NILLSLESEE VRMVGIWGPS GIGKTDIARA LYSRLAHRFQ  1380
RTIFVDMSFV YRRPDYYGAK VDFQTQFLSE VLGREYFKVG MDHLCMVRDM LKEQRVLIIL  1440
DDVDDQVRLL DVLVEQTEWF GSGSRIVVIT QDIGLLKSYG IDKIYYVDLP SQKEALQMFC  1500
QSAFRQNYPP DGFMEIAVEV AEAVGNLPLG LIVLGSYLRG REITEWVDIL TQIKDSLDGK  1560
MEMILRVAYD SLSDHDDKII YLHIACLFNY DTVEYVTCLL SDSHLSVVCR LKSLAEKSFI  1620
HITENGYITM HHLQQNFGRE IVRNESIYSP GKRQFLVDSE DILDVFQDNT GTESVLGISL  1680
DISELDRELY ISERGFSGMT NLRFLKFYTN LGNKEVNVHL PHGLDYLCPK LRLLHWEAFP  1740
MRCMPSHFFP ENLVVLAMEA SKLEKLWNEA QPLRSLKCMK ISRSISDLYL DGTAIEEVPW  1800
WIENISRLSH LSMNDSWQNH PEEISTSVTT VNMSGNSFQR LPDTWTSIQP EDLIFHSCRN  1860
LVSLPTLPTS LFRLTANNCE SLESLHGVLT IYLPRSSLSK RFPSFKACIM IESRSGSFHF  1920
GLLNYSDVQF EFDCLDDKKE MIQIKECGIQ LLEVSPSADE SGKIFKPESG YDSEESDVED  1980
IGSCKRIRVD YLFPDQMNNN RLGFRFSPTQ EELINFYLKN KNLGKEWIVE EAISEININS  2040
YEPKLLPSLS KIKSNDLVWY FFSPYEYTNK TRKRTTSNGV WKLTGPERKI KDKGGIGGEI  2100
GIVKTLVYHE RKPSSGGWTP WVMHEYHITC LPPDQRTYVL CKILYKGEAR DFPSGNNEVG  2160
IIPSDFPSAG NYSSDLCYSF VGDSNSVGAT SLTKMKKRQQ KLPSVQTPVV DSNTVRAANF  2220
SKMYRLLQNL PSVEIQGKFN SDTAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_C4e-4061474151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_A4e-4061474151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021663001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714869.10.0PREDICTED: disease resistance protein RRS1-like
SwissprotQ9FL920.0WRK16_ARATH; Probable WRKY transcription factor 16
TrEMBLA0A078GCT40.0A0A078GCT4_BRANA; BnaC09g18980D protein
STRINGBra027598.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]