PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021546001
Common NameGSBRNA2T00021546001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 653aa    MW: 74287.1 Da    PI: 10.2295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021546001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-15461506555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hne ErrRR+riN+++ +L++llP+a      K +K++iL  ++e++k+Lq
  GSBRNA2T00021546001 461 HNESERRRRHRINQRMRTLQKLLPTA-----SKADKVSILDDVIEHLKQLQ 506
                          *************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037634.5E-19153252IPR005516Remorin, C-terminal
SuperFamilySSF474593.53E-17453524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-7461510No hitNo description
Gene3DG3DSA:4.10.280.107.3E-16461516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-12461506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MDNLVKQRRR RVSVSENKQT DMPKLSELAI TDNPALNWLK NQAYWYEKND YYDEKESEFA  60
TSVAAAAFVI ASMEEAYKEH AKRMREETKR SRKKKTNPVI AKSEVKRINR SYTQDLTIGE  120
ESFKKQQMDN PQKDRREQEI GSSSRTSGLA SAPSKADSWE KSQLDKIRLR YEKMKAEIVG  180
WENERKSAAK LRMEKRKSEL QKRTEINNQH YKAKLARIQV IADGAKKQLE EKKRSQEAQV  240
QEKVKKMRRT GKREDSRQGN SNPLPHILEN RGGHQDYTTK RRKKKEKLNC QSNYGVKELT  300
WENGQLTVHG LGEGVEPTTA SANLLWTQAL NGCETLESVV HQAALQPSKL QSQNGRDHNN  360
SESKDGSCSR KRGYPQEMDC WFSGQEESHR VGHSVTASAS GTNMSWASFE SGRSLKTART  420
GDRDYLFSGS ETKETEGDEQ ETRGEAGRSN NGRRGRAAAI HNESERRRRH RINQRMRTLQ  480
KLLPTASKAD KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMMPQSVLS IQHQQQQHQQ  540
QQQQQQQQQQ QQFQMSLLAT MARMGMGGGG NAAYGGLVPP PPPLMIPPMD NRDCTNASSA  600
SLTDPYSAFL AQTMNMDLYN KMAAAIYRQQ SDQTTKVNTS MPSSSSNHEK RD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285RRKKKE
2281286RKKKEK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Barely detectable in dark-grown seedlings. Induced after 2 hours of light exposure.
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting negatively in the phytochrome B signaling pathway under prolonged red light. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. May regulate the expression of a subset of genes by binding to the G-box motif. {ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:18252845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021546001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By red light. Stable upon light exposure.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527340.0AK352734.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594159.10.0PREDICTED: transcription factor PIF7
SwissprotQ570R71e-180PIF7_ARATH; Transcription factor PIF7
TrEMBLA0A078GEN90.0A0A078GEN9_BRANA; BnaC07g31140D protein
STRINGBra012972.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141231822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-160phytochrome-interacting factor7
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. de Wit M,Ljung K,Fankhauser C
    Contrasting growth responses in lamina and petiole during neighbor detection depend on differential auxin responsiveness rather than different auxin levels.
    New Phytol., 2015. 208(1): p. 198-209
    [PMID:25963518]
  5. Bou-Torrent J, et al.
    Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors.
    Plant Physiol., 2015. 169(3): p. 1584-94
    [PMID:26082398]
  6. Mizuno T,Oka H,Yoshimura F,Ishida K,Yamashino T
    Insight into the mechanism of end-of-day far-red light (EODFR)-induced shade avoidance responses in Arabidopsis thaliana.
    Biosci. Biotechnol. Biochem., 2015. 79(12): p. 1987-94
    [PMID:26193333]
  7. Paik I,Kathare PK,Kim JI,Huq E
    Expanding Roles of PIFs in Signal Integration from Multiple Processes.
    Mol Plant, 2017. 10(8): p. 1035-1046
    [PMID:28711729]
  8. Peng M, et al.
    Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.
    Plant Physiol., 2018. 176(2): p. 1341-1351
    [PMID:29187567]
  9. Huang X, et al.
    Shade-induced nuclear localization of PIF7 is regulated by phosphorylation and 14-3-3 proteins in Arabidopsis.
    Elife, 2019.
    [PMID:29926790]