PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020688001
Common NameGSBRNA2T00020688001, LOC106422930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 142aa    MW: 16485 Da    PI: 6.6676
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020688001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-4263140178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqve+C+ad+s+ak+yh+rhkvCe+h+kap v +sgl qrfCqqCsrfhelsefD++krsCrrrLa+hnerrr++++
  GSBRNA2T00020688001  63 ACQVERCTADMSRAKQYHKRHKVCEFHAKAPLVRISGLYQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRRNTT 140
                          5*************************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.7E-561141IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.2E-3257125IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.82961138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.08E-3763139IPR004333Transcription factor, SBP-box
PfamPF031104.6E-3264137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSTRRSRAGE KRSLREMSEE EEEDEEDEET FEGEEDEDTS DEEAVEKKQK GKATTSSSSG  60
TGACQVERCT ADMSRAKQYH KRHKVCEFHA KAPLVRISGL YQRFCQQCSR FHELSEFDDT  120
KRSCRRRLAG HNERRRRNTT Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3955137284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.46670.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00020688001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411469e-57AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719171.18e-98PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930152e-58SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLA0A078J4759e-98A0A078J475_BRANA; Squamosa promoter-binding-like protein
STRINGBra021880.1-P4e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.17e-47squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]