PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017079001
Common NameGSBRNA2T00017079001, LOC106345620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 171aa    MW: 19887.2 Da    PI: 7.5714
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017079001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.23.2e-1287135553
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                          +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++  
  GSBRNA2T00017079001  87 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNSVL 135
                          79****************************************9999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-1383147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5385148IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-1287136No hitNo description
PfamPF001702.2E-1087144IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-1087135No hitNo description
CDDcd147023.67E-1788136No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MIPAEITGYF QYLSQENLTM IPAEFNVINM PSSPTSSSSL NYLNDLINNN NYSSSSNGQD  60
LMLSNNSTSD EDHHYNHRQS IIILDERKQR RMLSNRESAR RSRMRKQRHL DELWSQVIRL  120
RNENNCLIDK LNSVLETQDN VLKENSKLKE EASDLRRLVC DLKSNKYNSF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199106RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017079001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596246.11e-120PREDICTED: basic leucine zipper 43-like
RefseqXP_013640250.11e-120basic leucine zipper 43-like
TrEMBLA0A078JVE11e-119A0A078JVE1_BRANA; BnaCnng73390D protein
TrEMBLA0A0D3DAR71e-119A0A0D3DAR7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EYG01e-119A0A3P6EYG0_BRAOL; Uncharacterized protein
STRINGBo7g081750.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.14e-66basic leucine-zipper 48
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]