PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017048001
Common NameGSBRNA2T00017048001, LOC106346043
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 436aa    MW: 47182.4 Da    PI: 6.5771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017048001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-063303641554
                          HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++ ++++ L++l+ +      +K + a++L +A+eYIk L
  GSBRNA2T00017048001 330 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 364
                          899***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.328315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-4324370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-6325369No hitNo description
SuperFamilySSF474593.53E-11328380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-11329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHVQMIGL  60
GLSSQSHVDQ WNQSLLRGDS KAETGFGVML QENLNLDATS NANANTTSYQ LQESDPSHHQ  120
ALWRDPHINN SDFKPQLNMT SSNNRGFFLD HQFSPHGSSS TDSSTVTCQG FSSDNPSNTL  180
YGPTATTPNS SSAMFHHHQA AGFNMPGSSD QQPSRTHQAS NLGYSQFGSS TGNYDQTALR  240
FSNNATFWNP TATAGNVGPT HHDASSNYFP ALQPPQIHAP SFDEQPKGMS EIKDLSSSEV  300
KRAGGDQPAA KRAKSEAASP SPPFKVKKEK MSDRIAALQQ LVSPFGKTDQ ASVLSEAIEY  360
IKFLHQQVSA LSNPYMNSGA SLQHQQSDHP KELEVSKEPD LRSQGLCLVP VSSTFPVTHD  420
TTVDFWTPTF GGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640744.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078J1B10.0A0A078J1B1_BRANA; BnaA01g36370D protein
STRINGBra023939.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]